As part of my work at INRAE and on various scientific projects, I supervise or co-supervise trainees (DUT, M1 and M2) and engineers, particularly on development tasks.

Emeline BRUYERE - Construction, characterisation and visualisation of bacterial pangenomes at different evolutionary scales - M2 internship - Université Paris-Saclay (2024-03-04 - 2024-08-16)

Elora VIGO - Evolution of the Omnicrobe web interface to order data by quality - M1 internship - Université Paris-Saclay (2023-05-01 - 2023-06-30)

Safiya ATIA - Genoscapist, adding customising functionalities of graphic elements via the user interface - M1 internship - Université Paris-Saclay (2022-05-02 - 2022-07-29)

Romane BEGHIN - Genoscapist, adding on-the-fly data loading functionalities - M1 internship - Université Paris-Saclay (2022-05-02 - 2022-07-29)

Nagi DEBBAH - Development of a Snakemake workflow for pseudogene detection - M1 internship - Université Paris Diderot (2020-05-18 - 2020-08-14)

Reda MEKDAD - Omnicrobe API development - Fixed-term contract engineer (2019-08-01 - 2020-03-31)

Sam AH-LONE - Development of an application for aligning complete bacterial genomes - M2 apprenticeship - Université Rouen Normandie (2017-09-01 - 2019-08-31)

Quentin CAVAILLE - Development of a tool for cheese ecosystem analysis with metagenomic datasets - Fixed-term contract engineer (2017-10-02 - 2019-03-29)

Sam AH-LONE - Evaluation of published and available tools for aligning complete bacterial genomes (advantages/limitations) - M1 internship - Université Rouen Normandie (2017-03-01 - 2017-08-30)

Thi-Phuong-Lien NGUYEN - Integration of tools in Galaxy - Fixed-term contract engineer (2016-12-01 - 2018-06-30)

Ghislain FIEVET - Creation of an IMSV data warehouse - Fixed-term contract engineer (2015-10-01 - 2016-06-30)

Stéphane PEILLET - Integration of tools and workflows in Galaxy: quality control and improved reproducibility - M2 internship - Ecole d’ingénieurs Paris-Sud Ivry ESME (2014-04-01 - 2014-09-30)

Yann GUARRACINO - Implementation of NGS workflows in a Galaxy environment - M1 internship - Université Paris Diderot (2013-03-01 - 2013-05-31)

Najla BEN HASSINE - Study of the influence of the intestinal microbiota on the hypothalamic-pituitary-adrenal axis in the case of acute stress in rats using proteomic, transcriptomic and bioinformatics approaches - M2 internship - Université Evry Val d’Essonne (2012-01-01 - 2012-07-31)

Guillaume REBOUL - Implementation of a Genome Browser for rainbow trout - DUT internship - IUT Aurillac (2012-04-01 - 2012-06-30)